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近紅外光譜多核并行譜區(qū)選擇任務調度策略研究
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國家自然科學基金項目(31771670、31071319)、中央高?;究蒲袠I(yè)務費專項資金項目(XDJK2017C080)和西南大學博士基金項目(SWU116044)


Task Scheduling Strategies of Parallel Near Infrared Spectral Region Selection on Multi Core and Its Application
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    摘要:

    在近紅外光譜的譜區(qū)選擇算法中,滑動窗口偏最小二乘法具有較高的預測精度,但是其程序運行時間很長。在不改變算法預測精度的前提下,首先以分段間隔偏最小二乘法為基礎研究了順序分配法、等間距法和排序法等3種任務調度策略對并行算法性能的影響。在這3種任務調度策略中,排序法具有較好的負載均衡性和較高的并行效率。然后在16核云計算平臺下將排序法分配策略分別應用于組合分段偏最小二乘法、反向分段偏最小二乘法和滑動窗口偏最小二乘法等譜區(qū)的并行選擇算法中。經實驗測試,在單核串行算法下反向分段偏最小二乘法和滑動窗口偏最小二乘法的程序運行時間分別為9.22h和55.51h,在排序法分配策略下采用2核并行算法時其程序運行時間分別縮短為4.98h和29.03h,分別節(jié)省了45.99%和47.70%的程序運行時間。實驗結果表明:當考慮并行效率和計算成本時,在1~16核的并行算法中,選用2核并行執(zhí)行以上4種譜區(qū)選擇算法都具有最高的并行效率和性價比。

    Abstract:

    The moving window partial least squares (mwPLS) has higher prediction accuracy in the wavelength selection of near infrared spectroscopy, but the runtime of mwPLS is very long on single core serial algorithm. In order to reduce running time for wavelength selection, the task scheduling strategies on multi core were investigated. Taking interval partial least squares (iPLS) as example on the premise of not changing the prediction accuracy of the serial algorithm, the sequential distribution algorithm (SDA), equal space allocation algorithm (ESAA) and sorting allocation algorithm (SAA) were presented to study the effect of task scheduling strategy on the performance of parallel algorithm. The SAA had the best load balance and the highest parallel efficiency among the three task scheduling strategies. Then, based on the 16 cores cloud computing platform, the SAA was applied to the parallel wavelength selection algorithm of synergy interval partial least squares (siPLS), backward interval partial least squares (biPLS) and mwPLS. Comparing with single core serial algorithm, two cores parallel wavelength selection of biPLS and mwPLS with SAA reduced the runtime from 9.22h and 55.51h to 4.98h and 29.03h, and totally 45.99% and 47.70% runtime of biPLS and mwPLS were saved, respectively. The experimental results showed that when considering the parallel efficiency and computational cost condition, the two cores parallel algorithm for the four spectral region selection algorithms had the highest parallel efficiency and cost performance among the 1~16 core parallel algorithm.

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黃華,朱潔,劉廣昊,吳習宇,祝詩平.近紅外光譜多核并行譜區(qū)選擇任務調度策略研究[J].農業(yè)機械學報,2018,49(10):270-274,283. HUANG Hua, ZHU Jie, LIU Guanghao, WU Xiyu, ZHU Shiping. Task Scheduling Strategies of Parallel Near Infrared Spectral Region Selection on Multi Core and Its Application[J]. Transactions of the Chinese Society for Agricultural Machinery,2018,49(10):270-274,283.

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  • 收稿日期:2018-04-28
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  • 在線發(fā)布日期: 2018-10-10
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